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CanVAS Momozawa · Founder
Cosmic medallion portrait of cHD11_69_cHD11_69, a Labrador Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

cHD11_69_cHD11_69

cHD11_69_cHD11_69 is a Labrador Retriever from the Momozawa research cohort. One of 14,478 dogs who built the atlas.

See cHD11_69_cHD11_69 in the atlas
About cHD11_69_cHD11_69

cHD11_69_cHD11_69 sits well inside the Labrador Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Smooth coat. No wire-furnishings variant at RSPO2.
cHD11_69_cHD11_69's nearest neighbors

The five dogs in the atlas whose genomes sit closest to cHD11_69_cHD11_69's. Click any of them to keep exploring.

  1. cHD11_94_cHD11_94 Labrador Retriever 17.87
  2. cHD11_99_cHD11_99 Labrador Retriever 19.96
  3. cHD11_38_cHD11_38 Labrador Retriever 20.89
  4. cHD11_46_cHD11_46 Labrador Retriever 21.27
  5. cHD11_60_cHD11_60 Labrador Retriever 21.46
cHD11_69_cHD11_69's breed

cHD11_69_cHD11_69 sits in the Labrador Retriever cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Labrador Retriever 78%
  2. Golden Retriever 22%
Source

From the CanVAS (Momozawa cohort) . Breed-page reference: Labrador Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 C/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 T/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 6.771
y 1.279
z 7.661
PCA-256 distance from breed centroid
59.14
Outlier percentile in breed
49
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which cHD11_69_cHD11_69 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC56 z = -7.03
  • chr4:50,564,575 loading 0.0345
  • chr20:9,086,763 loading 0.0319
  • chr15:1,031,002 loading -0.0297
PC58 z = 4.97
  • chr1:34,766,687 loading 0.0326
  • chr12:57,607,923 loading -0.0310
  • chr6:35,486,219 loading 0.0308
PC36 z = -2.69
  • chr18:29,956,251 loading 0.0345
  • chr26:19,556,698 loading 0.0316
  • chr21:15,780,220 loading -0.0288
Ancestry reconstruction error: 0.91 (high - dog sits between cluster centroids)
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