Skip to main content
snıff
CanVAS Momozawa · Founder
Cosmic medallion portrait of cHD8_490_cHD8_490, a Labrador Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

cHD8_490_cHD8_490

cHD8_490_cHD8_490 is a Labrador Retriever from the Momozawa research cohort. One of 14,478 dogs who built the atlas.

See cHD8_490_cHD8_490 in the atlas
About cHD8_490_cHD8_490

cHD8_490_cHD8_490 sits near the center of the Labrador Retriever cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Smooth coat. No wire-furnishings variant at RSPO2.
cHD8_490_cHD8_490's nearest neighbors

The five dogs in the atlas whose genomes sit closest to cHD8_490_cHD8_490's. Click any of them to keep exploring.

  1. cHD8_517_cHD8_517 15.99
  2. cHD8_468_cHD8_468 Labrador Retriever 21.22
  3. cHD10_550_cHD10_550 Labrador Or Golden Retriever 23.46
  4. cHD8_479_cHD8_479 Labrador Retriever 23.63
  5. cHD8_472_cHD8_472 Labrador Retriever 23.98
cHD8_490_cHD8_490's breed

cHD8_490_cHD8_490 sits in the Labrador Retriever cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Labrador Retriever 79%
  2. Golden Retriever 21%
Source

From the CanVAS (Momozawa cohort) . Breed-page reference: Labrador Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 T/C
Coat
RSPO2 C/C
FGF5 T/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.737
y 0.746
z 7.451
PCA-256 distance from breed centroid
53.10
Outlier percentile in breed
22
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which cHD8_490_cHD8_490 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC56 z = -3.80
  • chr4:50,564,575 loading 0.0345
  • chr20:9,086,763 loading 0.0319
  • chr15:1,031,002 loading -0.0297
PC58 z = 2.50
  • chr1:34,766,687 loading 0.0326
  • chr12:57,607,923 loading -0.0310
  • chr6:35,486,219 loading 0.0308
PC3 z = -2.43
  • chr6:50,750,182 loading 0.0295
  • chr6:65,585,567 loading 0.0275
  • chr1:14,618,344 loading 0.0264
Ancestry reconstruction error: 0.87
Back to the Atlas →