Skip to main content
snıff
CanVAS Spatola · Founder
Cosmic medallion portrait of COLL_COLL_11451, a Collie
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

COLL_COLL_11451

COLL_COLL_11451 is a Collie from the Spatola research cohort. One of 14,478 dogs who built the atlas.

See COLL_COLL_11451 in the atlas
About COLL_COLL_11451

COLL_COLL_11451 sits near the center of the Collie cluster - genetically very typical for the breed.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
COLL_COLL_11451's nearest neighbors

The five dogs in the atlas whose genomes sit closest to COLL_COLL_11451's. Click any of them to keep exploring.

  1. COLL_COLL_07303 Collie 10.09
  2. COLL_COLL_00379 Collie 10.78
  3. COLL_COLL_00374 Collie 10.78
  4. COLL_COLL_07296 Collie 11.02
  5. COLL_COLL_28507 Collie 11.11
COLL_COLL_11451's breed

COLL_COLL_11451 sits in the Collie cluster, with genome overlap to Labrador Retriever, and Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Collie 87%
  2. Labrador Retriever 7%
  3. Golden Retriever 6%
Source

From the CanVAS (Spatola cohort) . Breed-page reference: Collie.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 –
HMGA2 C/C
SMAD2 G/G
LCORL G/G
STC2 –
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 –
FGF5 T/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 –
Skull shape
BMP3 –
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 1.152
y 5.829
z -9.527
PCA-256 distance from breed centroid
22.62
Outlier percentile in breed
5
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which COLL_COLL_11451 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC40 z = 8.78
  • chr3:66,859,090 loading 0.0315
  • chr5:34,597,402 loading -0.0299
  • chr10:40,957,281 loading -0.0291
PC127 z = 4.74
  • chr9:13,194,225 loading 0.0383
  • chr9:12,031,144 loading 0.0374
  • chr9:11,905,599 loading 0.0372
PC45 z = 4.23
  • chr21:49,887,138 loading 0.0323
  • chr14:48,394,398 loading -0.0308
  • chr32:37,683,789 loading -0.0274
Ancestry reconstruction error: 0.18
Back to the Atlas →