CanVAS Hayward2016 · Founder

F9-Mr-Big-PSVA-YT_F9-Mr-Big-PSVA-YT

F9-Mr-Big-PSVA-YT_F9-Mr-Big-PSVA-YT is a research dog from the Hayward2016 cohort. They weren't given a breed label - they're one of the dogs that helps the atlas understand what falls between breeds.

See F9-Mr-Big-PSVA-YT_F9-Mr-Big-PSVA-YT in the atlas

About this name and portrait

I'm sure you probably guessed by now. These aren't real pictures of these dogs. And these aren't their real names.

But these dogs were real. They were alive. They were loved. We thought they deserved more than a subject ID to be remembered by. The portraits are built from each dog's actual genome, so we tried to get it close. But it's not enough.

We want to see your dog's face. We want to celebrate them by the name they were loved by. We want to look back and say 'oh yeah, Bosco? The Dachshund-Corgi mix? I remember him, his FGF4 variant was wild, those little legs could hold a small house.'

These dogs gave something most people don't realize. The Heroes in the Golden Retriever Lifetime Study showed up for blood draws, health surveys, fur and nail samples, every single year. Some of them for 14 years. Their data has taught us about lymphoma, hemangiosarcoma, and aging in ways that help not just dogs but potentially humans. And they didn't ask for any of it.

Morris Animal Foundation calls them Heroes. We agree.

If your dog was part of any of these studies, we want to give you their page. Their real name. Their real photo. The recognition they earned.

Email [email protected].

About F9-Mr-Big-PSVA-YT_F9-Mr-Big-PSVA-YT

Predicted small by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
Carries both copies of the FGF4 chondrodysplasia retrogene - the short-leg variant in Dachshund, Pembroke Corgi, Basset Hound.
Wire-coat furnishings - the eyebrow + beard variant at RSPO2.

F9-Mr-Big-PSVA-YT_F9-Mr-Big-PSVA-YT's nearest neighbors

The five dogs in the atlas whose genomes sit closest to F9-Mr-Big-PSVA-YT_F9-Mr-Big-PSVA-YT's. Click any of them to keep exploring.

F9-Mr-Big-PSVA-YT_F9-Mr-Big-PSVA-YT's breed

F9-Mr-Big-PSVA-YT_F9-Mr-Big-PSVA-YT's genome decomposes mostly into Yorkshire Terrier, with additional weight on Labrador Retriever, and Golden Retriever.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

Source

From the CanVAS (Hayward2016 cohort) .

Full genotype detail

click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size

IGF1	A/A
HMGA2	C/C
SMAD2	A/A
LCORL	G/G
STC2	A/A
ADAMTS17	A/A

Leg length

FGF4·CFA18	T/T
FGF4·CFA12	C/C

Coat

RSPO2	T/T
FGF5	C/C
KRT71	T/C
MC1R	C/C

Ear set

MSRB3

G/A

Skull shape

BMP3	T/T
SMOC2	A/G

Technical details

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The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position

x 8.176
y -2.990
z 0.416

Top-3 principal components by |z|

The 3 PCs on which F9-Mr-Big-PSVA-YT_F9-Mr-Big-PSVA-YT scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC14 z = 4.13

chr2:9,971,173 loading 0.0294
chr24:32,514,754 loading -0.0259
chr24:20,979,390 loading -0.0251

PC12 z = 2.54

chr12:3,203,806 loading 0.0259
chr13:8,570,429 loading -0.0258
chr3:39,845,469 loading 0.0255

PC15 z = 2.07

chr27:9,604,099 loading 0.0251
chr9:58,501,670 loading -0.0250
chr9:46,847,361 loading 0.0246

Ancestry reconstruction error: 0.28

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