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CanVAS JenkinsWGS · Founder
Cosmic medallion portrait of GoS_30513_GoS_30513, a Gordon Setter
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GoS_30513_GoS_30513

GoS_30513_GoS_30513 is a Gordon Setter from the JenkinsWGS research cohort. One of 14,478 dogs who built the atlas.

See GoS_30513_GoS_30513 in the atlas
About GoS_30513_GoS_30513

GoS_30513_GoS_30513 sits near the center of the Gordon Setter cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries both copies of the FGF4 chondrodysplasia retrogene - the short-leg variant in Dachshund, Pembroke Corgi, Basset Hound.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GoS_30513_GoS_30513's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GoS_30513_GoS_30513's. Click any of them to keep exploring.

  1. PFZ20A09_PFZ20A09 Gordon Setter 19.69
  2. GoS_LU629_GoS_LU629 Gordon Setter 23.31
  3. PFZ21C01_PFZ21C01 Gordon Setter 23.90
  4. GoS_LU607_GoS_LU607 Gordon Setter 24.52
  5. GoS_LU631_GoS_LU631 Gordon Setter 25.61
GoS_30513_GoS_30513's breed

GoS_30513_GoS_30513 sits in the Gordon Setter cluster, with genome overlap to Golden Retriever, and Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Gordon Setter 87%
  2. Golden Retriever 7%
  3. Labrador Retriever 6%
Source

From the CanVAS (JenkinsWGS cohort) . Breed-page reference: Gordon Setter.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 A/A
LCORL A/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 T/T
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 3.600
y 4.270
z -7.117
PCA-256 distance from breed centroid
21.14
Outlier percentile in breed
3
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GoS_30513_GoS_30513 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC55 z = 7.03
  • chr24:21,414,064 loading 0.0303
  • chr22:46,871,951 loading -0.0285
  • chr34:8,498,060 loading -0.0284
PC54 z = -5.48
  • chr11:65,244,979 loading 0.0313
  • chr10:12,765,718 loading 0.0280
  • chr11:69,039,615 loading 0.0272
PC56 z = -4.45
  • chr4:50,564,575 loading 0.0345
  • chr20:9,086,763 loading 0.0319
  • chr15:1,031,002 loading -0.0297
Ancestry reconstruction error: 0.37
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