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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of GoS_LU646_GoS_LU646, a Gordon Setter
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GoS_LU646_GoS_LU646

GoS_LU646_GoS_LU646 is a Gordon Setter from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See GoS_LU646_GoS_LU646 in the atlas
About GoS_LU646_GoS_LU646

GoS_LU646_GoS_LU646 sits well inside the Gordon Setter cluster - a fairly typical example.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GoS_LU646_GoS_LU646's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GoS_LU646_GoS_LU646's. Click any of them to keep exploring.

  1. GoS_LU632_GoS_LU632 Gordon Setter 16.68
  2. GoS_LU633_GoS_LU633 Gordon Setter 17.71
  3. GoS_LU628_GoS_LU628 Gordon Setter 18.00
  4. GoS_LU615_GoS_LU615 Gordon Setter 18.33
  5. GoS_LU642_GoS_LU642 Gordon Setter 18.47
GoS_LU646_GoS_LU646's breed

GoS_LU646_GoS_LU646 sits in the Gordon Setter cluster, with genome overlap to Labrador Retriever, and Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Gordon Setter 84%
  2. Labrador Retriever 8%
  3. Golden Retriever 8%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Gordon Setter.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 C/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 T/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/A
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 3.722
y 4.178
z -6.993
PCA-256 distance from breed centroid
29.02
Outlier percentile in breed
29
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GoS_LU646_GoS_LU646 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC55 z = 7.38
  • chr24:21,414,064 loading 0.0303
  • chr22:46,871,951 loading -0.0285
  • chr34:8,498,060 loading -0.0284
PC54 z = -5.83
  • chr11:65,244,979 loading 0.0313
  • chr10:12,765,718 loading 0.0280
  • chr11:69,039,615 loading 0.0272
PC238 z = -3.95
  • chr19:11,652,672 loading 0.0365
  • chr13:13,884,830 loading -0.0338
  • chr3:70,346,120 loading -0.0302
Ancestry reconstruction error: 0.47
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