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CanVAS Shannon · Founder
Cosmic medallion portrait of GRe_GT214_GRe_GT214, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRe_GT214_GRe_GT214

GRe_GT214_GRe_GT214 is a Golden Retriever from the Shannon research cohort. One of 14,478 dogs who built the atlas.

See GRe_GT214_GRe_GT214 in the atlas
About GRe_GT214_GRe_GT214

GRe_GT214_GRe_GT214 is a notable Golden Retriever - distinctive within the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
GRe_GT214_GRe_GT214's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRe_GT214_GRe_GT214's. Click any of them to keep exploring.

  1. W_GRe_GRe_GT214 Golden Retriever 4.38
  2. GRLS_grlsA7XQVQ Golden Retriever 29.79
  3. GRLS_grls31YGW1VV Golden Retriever 29.91
  4. GRLS_grlsHG8T2KPP Golden Retriever 30.24
  5. GRLS_grlsXJ8W6V11 Golden Retriever 30.34
GRe_GT214_GRe_GT214's breed

GRe_GT214_GRe_GT214 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 81%
  2. Labrador Retriever 19%
Source

From the CanVAS (Shannon cohort) . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 T/T
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.616
y 10.731
z 5.374
PCA-256 distance from breed centroid
40.36
Outlier percentile in breed
78
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRe_GT214_GRe_GT214 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC13 z = -3.69
  • chr11:38,528,765 loading 0.0255
  • chr18:48,123,615 loading 0.0255
  • chr15:30,849,502 loading 0.0253
PC196 z = 2.32
  • chr23:3,426,742 loading 0.0355
  • chr23:3,756,166 loading 0.0335
  • chr4:38,305,840 loading 0.0333
PC144 z = -2.27
  • chr17:4,173,842 loading 0.0340
  • chr34:2,125,452 loading 0.0333
  • chr17:4,128,965 loading 0.0327
Ancestry reconstruction error: 0.68
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