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CanVAS Shannon · Founder
Cosmic medallion portrait of GRe_GT217_GRe_GT217, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRe_GT217_GRe_GT217

GRe_GT217_GRe_GT217 is a Golden Retriever from the Shannon research cohort. One of 14,478 dogs who built the atlas.

See GRe_GT217_GRe_GT217 in the atlas
About GRe_GT217_GRe_GT217

GRe_GT217_GRe_GT217 sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
GRe_GT217_GRe_GT217's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRe_GT217_GRe_GT217's. Click any of them to keep exploring.

  1. GRLS_grlsI7NM0MNN Golden Retriever 29.76
  2. GRLS_grls0FZYUVOO Golden Retriever 29.79
  3. PILOT_grls4IH8IF22 Golden Retriever 30.30
  4. PFZ26G01_PFZ26G01 Golden Retriever 30.86
  5. PFZ23D02_PFZ23D02 Golden Retriever 31.44
GRe_GT217_GRe_GT217's breed

GRe_GT217_GRe_GT217 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 77%
  2. Labrador Retriever 23%
Source

From the CanVAS (Shannon cohort) . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.303
y 11.321
z 7.905
PCA-256 distance from breed centroid
30.12
Outlier percentile in breed
27
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRe_GT217_GRe_GT217 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC241 z = 3.48
  • chr29:25,388,461 loading 0.0320
  • chr9:34,293,305 loading 0.0320
  • chr6:50,176,215 loading 0.0305
PC232 z = 2.79
  • chr8:13,394,852 loading 0.0320
  • chr30:2,998,314 loading 0.0313
  • chr12:26,709,882 loading 0.0290
PC103 z = 2.65
  • chr1:73,451,600 loading 0.0356
  • chr1:69,785,342 loading 0.0343
  • chr18:18,333,364 loading 0.0329
Ancestry reconstruction error: 0.57
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