Skip to main content
snıff
GRLS Hero · Founder
Cosmic medallion portrait of GRLS_grlsC33PECFF, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsC33PECFF

GRLS_grlsC33PECFF is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsC33PECFF in the atlas
About GRLS_grlsC33PECFF

GRLS_grlsC33PECFF sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grlsC33PECFF's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsC33PECFF's. Click any of them to keep exploring.

  1. GRLS_grlsJUPGL5BB Golden Retriever 35.41
  2. PILOT_grls2Q386M99 Golden Retriever 35.60
  3. GRLS_grlsRGKS99MM Golden Retriever 36.08
  4. GRLS_grls8DCONYUU Golden Retriever 36.57
  5. GRLS_grlsTFYUPD00 Golden Retriever 36.74
GRLS_grlsC33PECFF's breed

GRLS_grlsC33PECFF sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 77%
  2. Labrador Retriever 23%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 C/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.188
y 10.338
z 9.068
PCA-256 distance from breed centroid
36.63
Outlier percentile in breed
61
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsC33PECFF scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC49 z = 3.69
  • chr22:1,808,281 loading 0.0358
  • chr1:70,511,608 loading 0.0354
  • chr22:2,157,682 loading 0.0341
PC53 z = -3.51
  • chr1:72,254,803 loading 0.0346
  • chr1:70,825,780 loading 0.0344
  • chr14:9,177,180 loading 0.0335
PC253 z = -2.87
  • chr27:12,240,889 loading 0.0349
  • chr22:40,186,686 loading -0.0299
  • chr3:9,727,004 loading 0.0298
Ancestry reconstruction error: 0.58
Back to the Atlas →