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Cosmic medallion portrait of GRLS_grlsG50LXUU, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsG50LXUU

GRLS_grlsG50LXUU is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsG50LXUU in the atlas
About GRLS_grlsG50LXUU

GRLS_grlsG50LXUU sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
GRLS_grlsG50LXUU's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsG50LXUU's. Click any of them to keep exploring.

  1. GRLS_grlsBMZY1XAA Golden Retriever 30.14
  2. GRLS_grls9XJ8GERR Golden Retriever 30.35
  3. GRLS_grlsC9MP35PP Golden Retriever 30.64
  4. PFZ26G01_PFZ26G01 Golden Retriever 31.48
  5. GRLS_grlsRLC7RDEE Golden Retriever 31.56
GRLS_grlsG50LXUU's breed

GRLS_grlsG50LXUU sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 74%
  2. Labrador Retriever 26%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 G/G
LCORL A/A
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.233
y 11.163
z 8.182
PCA-256 distance from breed centroid
31.01
Outlier percentile in breed
32
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsG50LXUU scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC186 z = -2.98
  • chr3:6,234,729 loading 0.0318
  • chr23:19,305,339 loading 0.0317
  • chr19:17,376,904 loading 0.0316
PC153 z = -2.92
  • chr1:8,915,253 loading 0.0302
  • chr21:10,672,189 loading 0.0296
  • chr32:19,444,200 loading -0.0293
PC237 z = 2.56
  • chr18:10,316,807 loading 0.0412
  • chr18:49,993,975 loading -0.0328
  • chr4:32,494,543 loading 0.0323
Ancestry reconstruction error: 0.58
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