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Cosmic medallion portrait of GRLS_grlsU5D03LXX, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsU5D03LXX

GRLS_grlsU5D03LXX is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsU5D03LXX in the atlas
About GRLS_grlsU5D03LXX

GRLS_grlsU5D03LXX sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grlsU5D03LXX's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsU5D03LXX's. Click any of them to keep exploring.

  1. GRLS_grls59085811 Golden Retriever 28.35
  2. PFZ37E10_PFZ37E10 Golden Retriever 28.55
  3. GRLS_grls81EERCKK Golden Retriever 28.64
  4. GRLS_grlsPJGEUQSS Golden Retriever 28.77
  5. GRLS_grlsV0BT15XX Golden Retriever 28.82
GRLS_grlsU5D03LXX's breed

GRLS_grlsU5D03LXX sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 83%
  2. Labrador Retriever 17%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.085
y 11.475
z 7.849
PCA-256 distance from breed centroid
30.53
Outlier percentile in breed
29
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsU5D03LXX scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC43 z = -3.91
  • chr28:11,007,373 loading 0.0365
  • chr28:5,497,677 loading 0.0343
  • chr7:43,226,466 loading 0.0325
PC237 z = -2.58
  • chr18:10,316,807 loading 0.0412
  • chr18:49,993,975 loading -0.0328
  • chr4:32,494,543 loading 0.0323
PC178 z = 2.53
  • chr1:96,988,408 loading 0.0367
  • chr25:3,927,722 loading -0.0336
  • chr25:4,418,784 loading 0.0319
Ancestry reconstruction error: 0.61
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