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CanVAS Shannon · Founder
Cosmic medallion portrait of GSl_GT234_GSl_GT234, a Greenland Sledge Dog
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GSl_GT234_GSl_GT234

GSl_GT234_GSl_GT234 is a Greenland Sledge Dog from the Shannon research cohort. One of 14,478 dogs who built the atlas.

See GSl_GT234_GSl_GT234 in the atlas
About GSl_GT234_GSl_GT234

GSl_GT234_GSl_GT234 sits near the center of the Greenland Sledge Dog cluster - genetically very typical for the breed.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GSl_GT234_GSl_GT234's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GSl_GT234_GSl_GT234's. Click any of them to keep exploring.

  1. GSl_GT236_GSl_GT236 Greenland Sledge Dog 11.54
  2. GSl_GT237_GSl_GT237 Greenland Sledge Dog 12.81
  3. GSl_GT230_GSl_GT230 Greenland Sledge Dog 12.86
  4. GSl_GT233_GSl_GT233 Greenland Sledge Dog 13.14
  5. GSl_GT226_GSl_GT226 Greenland Sledge Dog 13.20
GSl_GT234_GSl_GT234's breed

GSl_GT234_GSl_GT234 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 59%
  2. Labrador Retriever 42%
Source

From the CanVAS (Shannon cohort) . Breed-page reference: Greenland Sledge Dog.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 C/C
ADAMTS17 G/A
Leg length
FGF4·CFA18 T/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.556
y 8.508
z -9.259
PCA-256 distance from breed centroid
8.20
Outlier percentile in breed
8
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GSl_GT234_GSl_GT234 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC50 z = -8.87
  • chr22:2,473,315 loading 0.0334
  • chr22:1,969,643 loading -0.0326
  • chr4:32,946,669 loading -0.0320
PC45 z = 6.14
  • chr21:49,887,138 loading 0.0323
  • chr14:48,394,398 loading -0.0308
  • chr32:37,683,789 loading -0.0274
PC47 z = 5.90
  • chr22:2,367,358 loading 0.0405
  • chr22:5,622,508 loading -0.0403
  • chr22:4,235,154 loading -0.0403
Ancestry reconstruction error: 0.57
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