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CanVAS Spatola · Founder
Cosmic medallion portrait of HAVA_HAVA_27428, a Havanese
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

HAVA_HAVA_27428

HAVA_HAVA_27428 is a Havanese from the Spatola research cohort. One of 14,478 dogs who built the atlas.

See HAVA_HAVA_27428 in the atlas
About HAVA_HAVA_27428

HAVA_HAVA_27428 is a strong genetic outlier within the Havanese cluster - among the most distinctive examples of their breed.

  • Predicted small by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries both copies of the FGF4 chondrodysplasia retrogene - the short-leg variant in Dachshund, Pembroke Corgi, Basset Hound.
HAVA_HAVA_27428's nearest neighbors

The five dogs in the atlas whose genomes sit closest to HAVA_HAVA_27428's. Click any of them to keep exploring.

  1. HAVA_HAVA_27160 Havanese 15.57
  2. HAVA_HAVA_07533 Havanese 15.68
  3. HAVA_HAVA_27929 Havanese 15.89
  4. HAVA_HAVA_07323 Havanese 16.20
  5. HAVA_HAVA_07628 Havanese 16.22
HAVA_HAVA_27428's breed

HAVA_HAVA_27428 sits in the Havanese cluster, with genome overlap to Labrador Retriever, and Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Havanese 76%
  2. Labrador Retriever 14%
  3. Golden Retriever 11%
Source

From the CanVAS (Spatola cohort) . Breed-page reference: Havanese.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 –
HMGA2 C/C
SMAD2 A/G
LCORL G/G
STC2 –
ADAMTS17 G/A
Leg length
FGF4·CFA18 T/T
FGF4·CFA12 C/C
Coat
RSPO2 –
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 –
Skull shape
BMP3 –
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x -0.391
y -0.968
z 3.594
PCA-256 distance from breed centroid
39.09
Outlier percentile in breed
96
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which HAVA_HAVA_27428 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC83 z = 3.46
  • chr4:1,519,291 loading 0.0346
  • chr4:1,791,116 loading 0.0333
  • chr4:1,268,630 loading 0.0330
PC30 z = -3.42
  • chr22:1,635,288 loading 0.0319
  • chr13:9,677,426 loading 0.0297
  • chr7:41,071,296 loading 0.0289
PC34 z = 2.02
  • chr12:32,936,523 loading 0.0310
  • chr24:6,196,307 loading 0.0310
  • chr24:10,982,162 loading 0.0302
Ancestry reconstruction error: 0.34
Back to the Atlas →