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CanVAS Spatola · Founder
Cosmic medallion portrait of INCA_INCA_Z2D05, a Peruvian Inca Orchid
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

INCA_INCA_Z2D05

INCA_INCA_Z2D05 is a Peruvian Inca Orchid from the Spatola research cohort. One of 14,478 dogs who built the atlas.

See INCA_INCA_Z2D05 in the atlas
About INCA_INCA_Z2D05

INCA_INCA_Z2D05 is a strong genetic outlier within the Peruvian Inca Orchid cluster - among the most distinctive examples of their breed.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries both copies of the FGF4 chondrodysplasia retrogene - the short-leg variant in Dachshund, Pembroke Corgi, Basset Hound.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
INCA_INCA_Z2D05's nearest neighbors

The five dogs in the atlas whose genomes sit closest to INCA_INCA_Z2D05's. Click any of them to keep exploring.

  1. UKRA_UKRA_DUKR13 Village Dog Ukraine 16.38
  2. POL_POL_19PL Polish Lowland Sheepdog 16.87
  3. KAZ_KAZ_10KZ Village Dog Kazakhstan 17.15
  4. ARM_ARM_34A Village Dog Armenia 17.23
  5. MXOL_MXOL_Z1C04 Village Dog Mexico 17.33
INCA_INCA_Z2D05's breed

INCA_INCA_Z2D05 sits in the Peruvian Inca Orchid cluster, with genome overlap to Labrador Retriever, and Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Peruvian Inca Orchid 58%
  2. Labrador Retriever 22%
  3. Golden Retriever 20%
Source

From the CanVAS (Spatola cohort) . Breed-page reference: Peruvian Inca Orchid.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/C
SMAD2 G/G
LCORL G/G
STC2 C/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 T/T
Coat
RSPO2 T/T
FGF5 T/T
KRT71 C/C
MC1R C/C
Ear set
MSRB3 G/G
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x -3.950
y 5.098
z 5.109
PCA-256 distance from breed centroid
44.54
Outlier percentile in breed
96
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which INCA_INCA_Z2D05 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC10 z = -2.51
  • chr13:43,330,325 loading 0.0255
  • chr17:50,562,684 loading 0.0245
  • chr19:34,146,978 loading 0.0244
PC0 z = -1.86
  • chr31:24,034,799 loading 0.0198
  • chr4:6,597,969 loading 0.0191
  • chr4:12,554,691 loading 0.0189
PC1 z = -1.37
  • chr9:47,994,731 loading 0.0344
  • chr3:60,515,324 loading 0.0321
  • chr13:34,762,090 loading 0.0304
Ancestry reconstruction error: 0.19
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