Skip to main content
snıff
CanVAS Hayward2016 · Founder
Cosmic medallion portrait of NSD_GT306_NSD_GT306, a Nova Scotia Duck Tolling Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

NSD_GT306_NSD_GT306

NSD_GT306_NSD_GT306 is a Nova Scotia Duck Tolling Retriever from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See NSD_GT306_NSD_GT306 in the atlas
About NSD_GT306_NSD_GT306

NSD_GT306_NSD_GT306 sits near the center of the Nova Scotia Duck Tolling Retriever cluster - genetically very typical for the breed.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
NSD_GT306_NSD_GT306's nearest neighbors

The five dogs in the atlas whose genomes sit closest to NSD_GT306_NSD_GT306's. Click any of them to keep exploring.

  1. NSD_GT300_NSD_GT300 Nova Scotia Duck Tolling Retriever 17.82
  2. PFZ36E02_PFZ36E02 Nova Scotia Duck Tolling Retriever 18.00
  3. PFZ34H03_PFZ34H03 Nova Scotia Duck Tolling Retriever 18.22
  4. PFZ34A04_PFZ34A04 Nova Scotia Duck Tolling Retriever 18.36
  5. NSDTR_33313_NSDTR_33313 Nova Scotia Duck Tolling Retriever 18.46
NSD_GT306_NSD_GT306's breed

NSD_GT306_NSD_GT306 sits in the Nova Scotia Duck Tolling Retriever cluster, with genome overlap to Golden Retriever, and Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Nova Scotia Duck Tolling Retriever 87%
  2. Golden Retriever 8%
  3. Labrador Retriever 5%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Nova Scotia Duck Tolling Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/T
SMAD2 A/G
LCORL G/G
STC2 C/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x -1.573
y -0.098
z 5.402
PCA-256 distance from breed centroid
18.55
Outlier percentile in breed
6
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which NSD_GT306_NSD_GT306 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC44 z = -9.68
  • chr29:21,886,817 loading 0.0283
  • chr32:36,857,898 loading -0.0278
  • chr37:28,513,334 loading -0.0274
PC45 z = -8.84
  • chr21:49,887,138 loading 0.0323
  • chr14:48,394,398 loading -0.0308
  • chr32:37,683,789 loading -0.0274
PC40 z = 6.20
  • chr3:66,859,090 loading 0.0315
  • chr5:34,597,402 loading -0.0299
  • chr10:40,957,281 loading -0.0291
Ancestry reconstruction error: 0.24
Back to the Atlas →