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GRLS Hero Oldie · Founder
Cosmic medallion portrait of Oldies_grls8db417e6, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

Oldies_grls8db417e6

Oldies_grls8db417e6 is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See Oldies_grls8db417e6 in the atlas
About Oldies_grls8db417e6

Oldies_grls8db417e6 sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
Oldies_grls8db417e6's nearest neighbors

The five dogs in the atlas whose genomes sit closest to Oldies_grls8db417e6's. Click any of them to keep exploring.

  1. GRLS_grlsD2P6YHFF Golden Retriever 35.80
  2. GRLS_grls43OSKSII Golden Retriever 35.94
  3. GRLS_grls27Z1P2NN Golden Retriever 36.10
  4. GRLS_grlsFBCOXUUU Golden Retriever 36.26
  5. GRLS_grlsWNCB12KK Golden Retriever 36.65
Oldies_grls8db417e6's breed

Oldies_grls8db417e6 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 84%
  2. Labrador Retriever 16%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.596
y 10.252
z 8.376
PCA-256 distance from breed centroid
33.14
Outlier percentile in breed
43
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which Oldies_grls8db417e6 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC138 z = 3.14
  • chr15:23,130,452 loading 0.0401
  • chr28:1,724,663 loading 0.0367
  • chr15:42,263,341 loading 0.0350
PC137 z = 2.93
  • chr22:28,989,668 loading 0.0410
  • chr22:28,783,539 loading -0.0357
  • chr19:1,162,032 loading 0.0337
PC113 z = 2.86
  • chr22:17,237,143 loading 0.0474
  • chr22:17,327,096 loading 0.0458
  • chr1:53,531,199 loading 0.0436
Ancestry reconstruction error: 0.55
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