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GRLS Hero Oldie · Founder
Cosmic medallion portrait of Oldies_grlsb905b3b8, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

Oldies_grlsb905b3b8

Oldies_grlsb905b3b8 is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See Oldies_grlsb905b3b8 in the atlas
About Oldies_grlsb905b3b8

Oldies_grlsb905b3b8 sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
Oldies_grlsb905b3b8's nearest neighbors

The five dogs in the atlas whose genomes sit closest to Oldies_grlsb905b3b8's. Click any of them to keep exploring.

  1. GRLS_grlsEZU6HFFF Golden Retriever 30.39
  2. GRLS_grlsTLHX4DRR Golden Retriever 31.14
  3. GRLS_grls9GCVJT44 Golden Retriever 31.17
  4. GRLS_grls2JD757FF Golden Retriever 31.32
  5. GRLS_grlsYDU6FUQQ Golden Retriever 31.48
Oldies_grlsb905b3b8's breed

Oldies_grlsb905b3b8 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 79%
  2. Labrador Retriever 21%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.271
y 10.875
z 6.380
PCA-256 distance from breed centroid
32.68
Outlier percentile in breed
41
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which Oldies_grlsb905b3b8 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC150 z = -2.80
  • chr18:2,954,407 loading 0.0354
  • chr4:9,808,812 loading -0.0348
  • chr24:4,114,956 loading 0.0343
PC64 z = -2.66
  • chr8:38,372,734 loading 0.0317
  • chr23:20,107,050 loading 0.0304
  • chr23:19,874,668 loading -0.0292
PC13 z = -2.32
  • chr11:38,528,765 loading 0.0255
  • chr18:48,123,615 loading 0.0255
  • chr15:30,849,502 loading 0.0253
Ancestry reconstruction error: 0.57
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