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CanVAS Spatola · Founder
Cosmic medallion portrait of PBGV_PBGV_09419, a Petit Basset Griffon Vendeen
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PBGV_PBGV_09419

PBGV_PBGV_09419 is a Petit Basset Griffon Vendeen from the Spatola research cohort. One of 14,478 dogs who built the atlas.

See PBGV_PBGV_09419 in the atlas
About PBGV_PBGV_09419

PBGV_PBGV_09419 is a notable Petit Basset Griffon Vendeen - distinctive within the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries both copies of the FGF4 chondrodysplasia retrogene - the short-leg variant in Dachshund, Pembroke Corgi, Basset Hound.
PBGV_PBGV_09419's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PBGV_PBGV_09419's. Click any of them to keep exploring.

  1. PBGV_PBGV_14506 Petit Basset Griffon Vendeen 12.14
  2. PBGV_PBGV_07322 Petit Basset Griffon Vendeen 12.26
  3. PBGV_PBGV_09400 Petit Basset Griffon Vendeen 12.43
  4. PBGV_PBGV_11478 Petit Basset Griffon Vendeen 12.52
  5. PBGV_PBGV_09411 Petit Basset Griffon Vendeen 12.61
PBGV_PBGV_09419's breed

PBGV_PBGV_09419 sits in the Labrador Retriever cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Labrador Retriever 56%
  2. Golden Retriever 44%
Source

From the CanVAS (Spatola cohort) . Breed-page reference: Petit Basset Griffon Vendeen.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 C/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 T/T
FGF4·CFA12 C/C
Coat
RSPO2 –
FGF5 T/C
KRT71 T/C
MC1R T/C
Ear set
MSRB3 –
Skull shape
BMP3 –
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x -4.034
y -2.153
z 4.603
PCA-256 distance from breed centroid
11.14
Outlier percentile in breed
75
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PBGV_PBGV_09419 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC208 z = -2.68
  • chr17:4,173,842 loading 0.0377
  • chr17:4,128,965 loading 0.0376
  • chr17:4,233,511 loading 0.0366
PC232 z = 2.63
  • chr8:13,394,852 loading 0.0320
  • chr30:2,998,314 loading 0.0313
  • chr12:26,709,882 loading 0.0290
PC251 z = -2.53
  • chr25:40,121,397 loading 0.0326
  • chr28:17,013,099 loading 0.0310
  • chr26:15,170,564 loading 0.0302
Ancestry reconstruction error: 0.58
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