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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ11A03_PFZ11A03, a Labrador Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ11A03_PFZ11A03

PFZ11A03_PFZ11A03 is a Labrador Retriever from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ11A03_PFZ11A03 in the atlas
About PFZ11A03_PFZ11A03

PFZ11A03_PFZ11A03 is a notable Labrador Retriever - distinctive within the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ11A03_PFZ11A03's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ11A03_PFZ11A03's. Click any of them to keep exploring.

  1. PFZ27H08_PFZ27H08 Labrador Retriever 18.27
  2. PFZ24B08_PFZ24B08 Labrador Retriever 18.34
  3. PFZ24F05_PFZ24F05 Labrador Retriever 18.61
  4. PFZ23H04_PFZ23H04 Labrador Retriever 19.37
  5. PFZ23G04_PFZ23G04 Labrador Retriever 20.00
PFZ11A03_PFZ11A03's breed

PFZ11A03_PFZ11A03 sits in the Labrador Retriever cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Labrador Retriever 77%
  2. Golden Retriever 23%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Labrador Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/C
SMAD2 G/G
LCORL G/G
STC2 C/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 T/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/T
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.336
y 2.946
z 3.240
PCA-256 distance from breed centroid
67.27
Outlier percentile in breed
86
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ11A03_PFZ11A03 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC20 z = -4.99
  • chr29:37,511,112 loading 0.0311
  • chr15:28,326,342 loading -0.0273
  • chr35:8,740,750 loading 0.0271
PC57 z = 4.91
  • chr22:902,803 loading 0.0514
  • chr22:1,384,447 loading 0.0453
  • chr22:2,157,682 loading -0.0450
PC79 z = 3.09
  • chr3:7,389,779 loading 0.0444
  • chr3:6,720,531 loading -0.0378
  • chr3:6,392,552 loading -0.0378
Ancestry reconstruction error: 0.94 (high - dog sits between cluster centroids)
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