Skip to main content
snıff
CanVAS Shannon · Founder
Cosmic medallion portrait of PFZ11E08_PFZ11E08, a Labrador Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ11E08_PFZ11E08

PFZ11E08_PFZ11E08 is a Labrador Retriever from the Shannon research cohort. One of 14,478 dogs who built the atlas.

See PFZ11E08_PFZ11E08 in the atlas
About PFZ11E08_PFZ11E08

PFZ11E08_PFZ11E08 sits well inside the Labrador Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ11E08_PFZ11E08's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ11E08_PFZ11E08's. Click any of them to keep exploring.

  1. PFZ11E07_PFZ11E07 Labrador Retriever 19.60
  2. PFZ22E05_PFZ22E05 Labrador Retriever 20.15
  3. 798_798 Labrador Retriever 21.28
  4. PFZ26D08_PFZ26D08 Labrador Retriever 21.96
  5. PFZ11D07_PFZ11D07 Labrador Retriever 22.28
PFZ11E08_PFZ11E08's breed

PFZ11E08_PFZ11E08 sits in the Labrador Retriever cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Labrador Retriever 77%
  2. Golden Retriever 24%
Source

From the CanVAS (Shannon cohort) . Breed-page reference: Labrador Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 A/G
LCORL G/G
STC2 C/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.294
y 0.011
z 6.571
PCA-256 distance from breed centroid
54.40
Outlier percentile in breed
25
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ11E08_PFZ11E08 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC97 z = 3.52
  • chr15:42,263,341 loading 0.0348
  • chr18:11,175,691 loading -0.0320
  • chr1:63,849,832 loading 0.0318
PC212 z = 2.95
  • chr28:326,614 loading 0.0378
  • chr2:50,919,591 loading 0.0372
  • chr28:1,791,942 loading -0.0335
PC249 z = -2.70
  • chr6:30,830,915 loading 0.0329
  • chr1:22,842,587 loading 0.0316
  • chr7:61,438,680 loading -0.0291
Ancestry reconstruction error: 0.88
Back to the Atlas →