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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ11G10_PFZ11G10, a Collie
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ11G10_PFZ11G10

PFZ11G10_PFZ11G10 is a Collie from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ11G10_PFZ11G10 in the atlas
About PFZ11G10_PFZ11G10

PFZ11G10_PFZ11G10 sits at the edge of the Collie cluster but still well within it.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ11G10_PFZ11G10's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ11G10_PFZ11G10's. Click any of them to keep exploring.

  1. PFZ11D05_PFZ11D05 Collie 16.12
  2. PFZ10B11_PFZ10B11 Collie 17.47
  3. PFZ10G10_PFZ10G10 Collie 17.57
  4. PFZ10H11_PFZ10H11 Collie 17.60
  5. PFZ10A10_PFZ10A10 Collie 18.76
PFZ11G10_PFZ11G10's breed

PFZ11G10_PFZ11G10 sits in the Collie cluster, with genome overlap to Golden Retriever, and Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Collie 83%
  2. Golden Retriever 10%
  3. Labrador Retriever 7%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Collie.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/C
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 12.528
y 4.035
z 3.352
PCA-256 distance from breed centroid
24.23
Outlier percentile in breed
65
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ11G10_PFZ11G10 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC40 z = 11.67
  • chr3:66,859,090 loading 0.0315
  • chr5:34,597,402 loading -0.0299
  • chr10:40,957,281 loading -0.0291
PC45 z = 5.89
  • chr21:49,887,138 loading 0.0323
  • chr14:48,394,398 loading -0.0308
  • chr32:37,683,789 loading -0.0274
PC117 z = -4.55
  • chr1:102,829,549 loading 0.0371
  • chr8:40,351,665 loading 0.0356
  • chr1:70,953,125 loading 0.0339
Ancestry reconstruction error: 0.22
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