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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ13F08_PFZ13F08, a Pug
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ13F08_PFZ13F08

PFZ13F08_PFZ13F08 is a Pug from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ13F08_PFZ13F08 in the atlas
About PFZ13F08_PFZ13F08

PFZ13F08_PFZ13F08 sits well inside the Pug cluster - a fairly typical example.

  • Predicted small by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PFZ13F08_PFZ13F08's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ13F08_PFZ13F08's. Click any of them to keep exploring.

  1. PFZ13E11_PFZ13E11 Pug 16.77
  2. PFZ16H07_PFZ16H07 Pug 16.90
  3. PFZ16C05_PFZ16C05 Pug 17.06
  4. PFZ43E03_PFZ43E03 Pug 17.24
  5. PFZ43D10_PFZ43D10 Pug 17.45
PFZ13F08_PFZ13F08's breed

PFZ13F08_PFZ13F08 sits in the Pug cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Pug 94%
  2. Golden Retriever 7%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Pug.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/C
SMAD2 A/A
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 C/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 G/G
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 17.489
y -4.197
z 4.526
PCA-256 distance from breed centroid
17.64
Outlier percentile in breed
32
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ13F08_PFZ13F08 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC52 z = 11.37
  • chr36:18,815,377 loading 0.0327
  • chr5:64,065,611 loading -0.0306
  • chr12:41,906,189 loading 0.0276
PC58 z = -7.60
  • chr1:34,766,687 loading 0.0326
  • chr12:57,607,923 loading -0.0310
  • chr6:35,486,219 loading 0.0308
PC48 z = 7.19
  • chr2:6,428,604 loading 0.0354
  • chr22:6,962,924 loading 0.0351
  • chr12:19,589,576 loading 0.0339
Ancestry reconstruction error: 0.20
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