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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ13H12_PFZ13H12, a Keeshond
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ13H12_PFZ13H12

PFZ13H12_PFZ13H12 is a Keeshond from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ13H12_PFZ13H12 in the atlas
About PFZ13H12_PFZ13H12

PFZ13H12_PFZ13H12 sits well inside the Keeshond cluster - a fairly typical example.

  • Predicted small by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
PFZ13H12_PFZ13H12's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ13H12_PFZ13H12's. Click any of them to keep exploring.

  1. KE_24827_KE_24827 Keeshond 19.93
  2. PFZ15G11_PFZ15G11 Keeshond 19.93
  3. KE_34857_KE_34857 Keeshond 20.07
  4. PFZ10B06_PFZ10B06 Keeshond 20.21
  5. KE_34445_KE_34445 Keeshond 20.30
PFZ13H12_PFZ13H12's breed

PFZ13H12_PFZ13H12 sits in the Keeshond cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Keeshond 92%
  2. Golden Retriever 8%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Keeshond.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/C
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x -0.041
y -4.079
z 9.865
PCA-256 distance from breed centroid
21.33
Outlier percentile in breed
38
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ13H12_PFZ13H12 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC84 z = 10.92
  • chr5:75,426,581 loading 0.0352
  • chr23:35,872,989 loading -0.0350
  • chr16:38,943,549 loading -0.0346
PC88 z = -6.31
  • chr9:17,136,318 loading 0.0333
  • chr18:47,049,795 loading -0.0330
  • chr9:15,299,806 loading -0.0320
PC89 z = -5.99
  • chr25:3,927,722 loading 0.0316
  • chr25:4,215,319 loading -0.0302
  • chr25:4,111,134 loading -0.0294
Ancestry reconstruction error: 0.29
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