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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ14F05_PFZ14F05, a Staffordshire Bull Terrier
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ14F05_PFZ14F05

PFZ14F05_PFZ14F05 is a Staffordshire Bull Terrier from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ14F05_PFZ14F05 in the atlas
About PFZ14F05_PFZ14F05

PFZ14F05_PFZ14F05 sits well inside the Staffordshire Bull Terrier cluster - a fairly typical example.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries both copies of the FGF4 chondrodysplasia retrogene - the short-leg variant in Dachshund, Pembroke Corgi, Basset Hound.
  • Smooth coat. No wire-furnishings variant at RSPO2.
PFZ14F05_PFZ14F05's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ14F05_PFZ14F05's. Click any of them to keep exploring.

  1. PFZ8C12_PFZ8C12 Staffordshire Bull Terrier 20.64
  2. PFZ9F05_PFZ9F05 Staffordshire Bull Terrier 20.65
  3. PFZ35H02_PFZ35H02 Airedale Terrier 20.81
  4. PFZ9A04_PFZ9A04 American Staffordshire Terrier 21.11
  5. PFZ44D03_PFZ44D03 Staffordshire Bull Terrier 21.16
PFZ14F05_PFZ14F05's breed

PFZ14F05_PFZ14F05 sits in the Staffordshire Bull Terrier cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Staffordshire Bull Terrier 86%
  2. Golden Retriever 14%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Staffordshire Bull Terrier.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 A/G
LCORL A/G
STC2 C/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 T/T
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 2.698
y 1.694
z 1.703
PCA-256 distance from breed centroid
23.87
Outlier percentile in breed
29
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ14F05_PFZ14F05 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC39 z = -2.60
  • chr38:19,205,467 loading 0.0283
  • chr22:8,222,365 loading 0.0280
  • chr29:3,059,812 loading 0.0271
PC21 z = -2.45
  • chr16:28,065,128 loading 0.0285
  • chr3:86,866,407 loading 0.0280
  • chr28:24,079,223 loading 0.0272
PC218 z = 1.98
  • chr7:62,094,557 loading 0.0330
  • chr17:4,233,511 loading -0.0324
  • chr28:21,567,516 loading 0.0320
Ancestry reconstruction error: 0.48
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