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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ9A04_PFZ9A04, a American Staffordshire Terrier
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ9A04_PFZ9A04

PFZ9A04_PFZ9A04 is a American Staffordshire Terrier from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ9A04_PFZ9A04 in the atlas
About PFZ9A04_PFZ9A04

PFZ9A04_PFZ9A04 sits well inside the American Staffordshire Terrier cluster - a fairly typical example.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ9A04_PFZ9A04's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ9A04_PFZ9A04's. Click any of them to keep exploring.

  1. PFZ35B10_PFZ35B10 American Pit Bull Terrier 17.55
  2. PFZ35H02_PFZ35H02 Airedale Terrier 19.29
  3. PFZ8C12_PFZ8C12 Staffordshire Bull Terrier 19.52
  4. PFZ9H05_PFZ9H05 Staffordshire Bull Terrier 19.68
  5. PFZ7E01_PFZ7E01 Staffordshire Bull Terrier 19.85
PFZ9A04_PFZ9A04's breed

PFZ9A04_PFZ9A04 sits firmly in the Golden Retriever cluster.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 100%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: American Staffordshire Terrier.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 C/C
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 2.665
y 1.704
z 1.699
PCA-256 distance from breed centroid
37.64
Outlier percentile in breed
27
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ9A04_PFZ9A04 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC196 z = 2.62
  • chr23:3,426,742 loading 0.0355
  • chr23:3,756,166 loading 0.0335
  • chr4:38,305,840 loading 0.0333
PC39 z = -2.47
  • chr38:19,205,467 loading 0.0283
  • chr22:8,222,365 loading 0.0280
  • chr29:3,059,812 loading 0.0271
PC21 z = -2.46
  • chr16:28,065,128 loading 0.0285
  • chr3:86,866,407 loading 0.0280
  • chr28:24,079,223 loading 0.0272
Ancestry reconstruction error: 0.48
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