Skip to main content
snıff
CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ19B11_PFZ19B11, a Labrador Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ19B11_PFZ19B11

PFZ19B11_PFZ19B11 is a Labrador Retriever from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ19B11_PFZ19B11 in the atlas
About PFZ19B11_PFZ19B11

PFZ19B11_PFZ19B11 sits well inside the Labrador Retriever cluster - a fairly typical example.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ19B11_PFZ19B11's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ19B11_PFZ19B11's. Click any of them to keep exploring.

  1. PFZ40A02_PFZ40A02 Labrador Retriever 25.01
  2. 798_798 Labrador Retriever 25.30
  3. 5742_5742 Labrador Retriever 25.70
  4. 30_30 Labrador Retriever 26.53
  5. PFZ1E11_PFZ1E11 Labrador Retriever 26.91
PFZ19B11_PFZ19B11's breed

PFZ19B11_PFZ19B11 sits in the Labrador Retriever cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Labrador Retriever 75%
  2. Golden Retriever 25%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Labrador Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.892
y 0.178
z 6.481
PCA-256 distance from breed centroid
54.63
Outlier percentile in breed
26
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ19B11_PFZ19B11 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC79 z = 3.37
  • chr3:7,389,779 loading 0.0444
  • chr3:6,720,531 loading -0.0378
  • chr3:6,392,552 loading -0.0378
PC97 z = 2.64
  • chr15:42,263,341 loading 0.0348
  • chr18:11,175,691 loading -0.0320
  • chr1:63,849,832 loading 0.0318
PC105 z = -2.50
  • chr9:10,719,447 loading 0.0424
  • chr34:1,972,619 loading -0.0401
  • chr34:1,432,211 loading -0.0400
Ancestry reconstruction error: 0.89
Back to the Atlas →