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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ1C10_PFZ1C10, a Labrador Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ1C10_PFZ1C10

PFZ1C10_PFZ1C10 is a Labrador Retriever from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ1C10_PFZ1C10 in the atlas
About PFZ1C10_PFZ1C10

PFZ1C10_PFZ1C10 sits well inside the Labrador Retriever cluster - a fairly typical example.

  • Predicted small by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ1C10_PFZ1C10's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ1C10_PFZ1C10's. Click any of them to keep exploring.

  1. 3285_3285 Labrador Retriever 21.30
  2. PFZ27B04_PFZ27B04 Labrador Retriever 21.84
  3. 3082_3082 Labrador Retriever 22.51
  4. cHD15_72_cHD15_72 Labrador Or Golden Retriever 23.38
  5. 5644_5644 Labrador Retriever 23.46
PFZ1C10_PFZ1C10's breed

PFZ1C10_PFZ1C10 sits in the Labrador Retriever cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Labrador Retriever 77%
  2. Golden Retriever 24%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Labrador Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 T/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 G/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.097
y -0.135
z 7.678
PCA-256 distance from breed centroid
55.89
Outlier percentile in breed
31
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ1C10_PFZ1C10 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC3 z = -2.64
  • chr6:50,750,182 loading 0.0295
  • chr6:65,585,567 loading 0.0275
  • chr1:14,618,344 loading 0.0264
PC2 z = -2.40
  • chr32:5,376,122 loading 0.0244
  • chr22:41,669,426 loading -0.0232
  • chr9:23,202,173 loading 0.0228
PC233 z = 2.35
  • chr16:48,608,303 loading 0.0348
  • chr13:24,655,299 loading -0.0330
  • chr23:1,734,032 loading 0.0330
Ancestry reconstruction error: 0.86
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