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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ23C05_PFZ23C05, a Mix
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ23C05_PFZ23C05

PFZ23C05_PFZ23C05 is a Mix from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ23C05_PFZ23C05 in the atlas
About PFZ23C05_PFZ23C05

PFZ23C05_PFZ23C05 sits at the edge of the Mix cluster but still well within it.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PFZ23C05_PFZ23C05's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ23C05_PFZ23C05's. Click any of them to keep exploring.

  1. PFZ25B12_PFZ25B12 Mix 16.33
  2. PFZ27A11_PFZ27A11 Mix 16.84
  3. PFZ25F12_PFZ25F12 Mix 17.02
  4. PFZ26F09_PFZ26F09 Mix 17.11
  5. PFZ27F02_PFZ27F02 Mix 17.26
PFZ23C05_PFZ23C05's breed

PFZ23C05_PFZ23C05 sits in the Labrador Retriever cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Labrador Retriever 75%
  2. Golden Retriever 25%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Mix.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/A
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.113
y 3.806
z 3.475
PCA-256 distance from breed centroid
46.04
Outlier percentile in breed
50
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ23C05_PFZ23C05 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC20 z = -5.72
  • chr29:37,511,112 loading 0.0311
  • chr15:28,326,342 loading -0.0273
  • chr35:8,740,750 loading 0.0271
PC57 z = 4.77
  • chr22:902,803 loading 0.0514
  • chr22:1,384,447 loading 0.0453
  • chr22:2,157,682 loading -0.0450
PC166 z = -3.58
  • chr24:4,330,562 loading 0.0317
  • chr24:4,114,956 loading -0.0315
  • chr1:95,775,744 loading -0.0303
Ancestry reconstruction error: 0.96 (high - dog sits between cluster centroids)
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