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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ23H01_PFZ23H01, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ23H01_PFZ23H01

PFZ23H01_PFZ23H01 is a Golden Retriever from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ23H01_PFZ23H01 in the atlas
About PFZ23H01_PFZ23H01

PFZ23H01_PFZ23H01 sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PFZ23H01_PFZ23H01's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ23H01_PFZ23H01's. Click any of them to keep exploring.

  1. GRLS_grlsYWX7H3EE Golden Retriever 27.68
  2. GRLS_grlsEBWSTBVV Golden Retriever 28.14
  3. GRLS_grls7ZDCH9RR Golden Retriever 28.21
  4. GRLS_grlsNE16VP22 Golden Retriever 28.62
  5. GRLS_grls9FNF6O11 Golden Retriever 29.07
PFZ23H01_PFZ23H01's breed

PFZ23H01_PFZ23H01 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 76%
  2. Labrador Retriever 24%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 C/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/A
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.391
y 11.401
z 8.235
PCA-256 distance from breed centroid
30.99
Outlier percentile in breed
32
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ23H01_PFZ23H01 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC43 z = -3.28
  • chr28:11,007,373 loading 0.0365
  • chr28:5,497,677 loading 0.0343
  • chr7:43,226,466 loading 0.0325
PC168 z = -2.59
  • chr13:7,517,248 loading 0.0370
  • chr13:1,243,516 loading -0.0357
  • chr3:3,383,464 loading 0.0349
PC199 z = -2.55
  • chr3:72,396,064 loading 0.0333
  • chr10:25,699,634 loading 0.0321
  • chr13:22,942,852 loading 0.0315
Ancestry reconstruction error: 0.61
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