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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ25A09_PFZ25A09, a Border Collie
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ25A09_PFZ25A09

PFZ25A09_PFZ25A09 is a Border Collie from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ25A09_PFZ25A09 in the atlas
About PFZ25A09_PFZ25A09

PFZ25A09_PFZ25A09 sits near the center of the Border Collie cluster - genetically very typical for the breed.

  • Predicted small by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
PFZ25A09_PFZ25A09's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ25A09_PFZ25A09's. Click any of them to keep exploring.

  1. PFZ36F09_PFZ36F09 Border Collie 17.19
  2. PFZ6H11_PFZ6H11 Border Collie 17.35
  3. PFZ7A01_PFZ7A01 Border Collie 17.53
  4. BC_23007_BC_23007 Border Collie 17.78
  5. PFZ8D02_PFZ8D02 Border Collie 17.79
PFZ25A09_PFZ25A09's breed

PFZ25A09_PFZ25A09 sits in the Border Collie cluster, with genome overlap to Labrador Retriever, and Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Border Collie 73%
  2. Labrador Retriever 14%
  3. Golden Retriever 13%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Border Collie.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/C
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 T/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 11.450
y 9.093
z -4.177
PCA-256 distance from breed centroid
30.91
Outlier percentile in breed
22
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ25A09_PFZ25A09 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC28 z = -5.53
  • chr1:23,982,151 loading 0.0270
  • chr20:38,628,243 loading 0.0270
  • chr12:42,365,450 loading 0.0269
PC27 z = 4.69
  • chr12:64,188,765 loading 0.0337
  • chr23:18,821,315 loading -0.0287
  • chr4:53,307,196 loading -0.0287
PC30 z = 4.05
  • chr22:1,635,288 loading 0.0319
  • chr13:9,677,426 loading 0.0297
  • chr7:41,071,296 loading 0.0289
Ancestry reconstruction error: 0.43
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