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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ26C02_PFZ26C02, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ26C02_PFZ26C02

PFZ26C02_PFZ26C02 is a Golden Retriever from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ26C02_PFZ26C02 in the atlas
About PFZ26C02_PFZ26C02

PFZ26C02_PFZ26C02 sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ26C02_PFZ26C02's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ26C02_PFZ26C02's. Click any of them to keep exploring.

  1. PFZ29E04_PFZ29E04 Golden Retriever 29.15
  2. PFZ4D08_PFZ4D08 Golden Retriever 29.47
  3. PILOT_grlsDJRE99ZZ Golden Retriever 29.78
  4. Oldies_grls54092a9c Golden Retriever 30.33
  5. GRLS_grls3XBWRSQQ Golden Retriever 30.46
PFZ26C02_PFZ26C02's breed

PFZ26C02_PFZ26C02 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 80%
  2. Labrador Retriever 20%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL A/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.027
y 11.582
z 7.813
PCA-256 distance from breed centroid
31.48
Outlier percentile in breed
35
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ26C02_PFZ26C02 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC169 z = -2.89
  • chr11:19,692,422 loading 0.0364
  • chr11:16,885,817 loading -0.0352
  • chr9:14,385,903 loading 0.0333
PC247 z = 2.51
  • chr3:7,959,527 loading 0.0294
  • chr16:43,038,278 loading -0.0293
  • chr19:17,213,086 loading 0.0288
PC43 z = -2.41
  • chr28:11,007,373 loading 0.0365
  • chr28:5,497,677 loading 0.0343
  • chr7:43,226,466 loading 0.0325
Ancestry reconstruction error: 0.63
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