Skip to main content
snıff
CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ26E10_PFZ26E10, a Mix
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ26E10_PFZ26E10

PFZ26E10_PFZ26E10 is a Mix from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ26E10_PFZ26E10 in the atlas
About PFZ26E10_PFZ26E10

PFZ26E10_PFZ26E10 sits well inside the Mix cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ26E10_PFZ26E10's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ26E10_PFZ26E10's. Click any of them to keep exploring.

  1. PFZ24F06_PFZ24F06 Mix 16.46
  2. PFZ24E08_PFZ24E08 Mix 16.55
  3. PFZ26A12_PFZ26A12 Mix 16.68
  4. PFZ25H10_PFZ25H10 Mix 19.97
  5. PFZ23G07_PFZ23G07 Mix 25.77
PFZ26E10_PFZ26E10's breed

PFZ26E10_PFZ26E10 sits in the Labrador Retriever cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Labrador Retriever 66%
  2. Golden Retriever 34%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Mix.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.616
y 1.221
z 3.086
PCA-256 distance from breed centroid
43.99
Outlier percentile in breed
29
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ26E10_PFZ26E10 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC57 z = -5.48
  • chr22:902,803 loading 0.0514
  • chr22:1,384,447 loading 0.0453
  • chr22:2,157,682 loading -0.0450
PC54 z = 3.88
  • chr11:65,244,979 loading 0.0313
  • chr10:12,765,718 loading 0.0280
  • chr11:69,039,615 loading 0.0272
PC59 z = -3.85
  • chr13:17,017,437 loading 0.0335
  • chr22:61,087,087 loading -0.0324
  • chr13:7,369,721 loading -0.0313
Ancestry reconstruction error: 0.85
Back to the Atlas →