Skip to main content
snıff
CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ29H05_PFZ29H05, a Vizsla
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ29H05_PFZ29H05

PFZ29H05_PFZ29H05 is a Vizsla from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ29H05_PFZ29H05 in the atlas
About PFZ29H05_PFZ29H05

PFZ29H05_PFZ29H05 sits well inside the Vizsla cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PFZ29H05_PFZ29H05's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ29H05_PFZ29H05's. Click any of them to keep exploring.

  1. PFZ10G09_PFZ10G09 Vizsla 17.70
  2. PFZ44A02_PFZ44A02 Vizsla 18.73
  3. PFZ38F12_PFZ38F12 Vizsla 18.82
  4. PFZ33D02_PFZ33D02 Vizsla 19.26
  5. PFZ42C05_PFZ42C05 Vizsla 19.67
PFZ29H05_PFZ29H05's breed

PFZ29H05_PFZ29H05 sits in the Vizsla cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Vizsla 95%
  2. Golden Retriever 5%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Vizsla.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 A/G
LCORL A/G
STC2 C/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 C/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/A
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x -1.833
y 12.682
z -1.514
PCA-256 distance from breed centroid
16.48
Outlier percentile in breed
48
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ29H05_PFZ29H05 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC28 z = 6.66
  • chr1:23,982,151 loading 0.0270
  • chr20:38,628,243 loading 0.0270
  • chr12:42,365,450 loading 0.0269
PC30 z = 5.19
  • chr22:1,635,288 loading 0.0319
  • chr13:9,677,426 loading 0.0297
  • chr7:41,071,296 loading 0.0289
PC35 z = 2.27
  • chr3:87,605,064 loading 0.0312
  • chr29:22,312,754 loading 0.0292
  • chr30:3,709,721 loading -0.0270
Ancestry reconstruction error: 0.26
Back to the Atlas →