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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ34D02_PFZ34D02, a Lhasa Apso
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ34D02_PFZ34D02

PFZ34D02_PFZ34D02 is a Lhasa Apso from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ34D02_PFZ34D02 in the atlas
About PFZ34D02_PFZ34D02

PFZ34D02_PFZ34D02 sits well inside the Lhasa Apso cluster - a fairly typical example.

  • Predicted small by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PFZ34D02_PFZ34D02's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ34D02_PFZ34D02's. Click any of them to keep exploring.

  1. PFZ19B01_PFZ19B01 Lhasa Apso 18.58
  2. PFZ38E10_PFZ38E10 Lhasa Apso 19.09
  3. PFZ18G09_PFZ18G09 Lhasa Apso 19.30
  4. PFZ18D03_PFZ18D03 Lhasa Apso 19.39
  5. PFZ19C11_PFZ19C11 Lhasa Apso 19.50
PFZ34D02_PFZ34D02's breed

PFZ34D02_PFZ34D02 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 57%
  2. Labrador Retriever 43%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Lhasa Apso.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/C
SMAD2 A/A
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 T/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 G/G
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 5.086
y 3.036
z 2.815
PCA-256 distance from breed centroid
33.40
Outlier percentile in breed
27
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ34D02_PFZ34D02 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC37 z = -4.45
  • chr30:33,900,950 loading 0.0365
  • chr1:31,256,526 loading 0.0299
  • chr28:38,109,009 loading 0.0284
PC61 z = -3.39
  • chr11:47,398,568 loading 0.0283
  • chr13:20,879,550 loading -0.0282
  • chr14:35,441,828 loading -0.0282
PC60 z = 3.10
  • chr2:79,935,004 loading 0.0311
  • chr4:63,750,215 loading -0.0309
  • chr11:23,826,298 loading 0.0301
Ancestry reconstruction error: 0.42
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