CanVAS Hayward2016 · Founder

PFZ34H04_PFZ34H04

PFZ34H04_PFZ34H04 is a Toy Manchester Terrier from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ34H04_PFZ34H04 in the atlas

About this name and portrait

I'm sure you probably guessed by now. These aren't real pictures of these dogs. And these aren't their real names.

But these dogs were real. They were alive. They were loved. We thought they deserved more than a subject ID to be remembered by. The portraits are built from each dog's actual genome, so we tried to get it close. But it's not enough.

We want to see your dog's face. We want to celebrate them by the name they were loved by. We want to look back and say 'oh yeah, Bosco? The Dachshund-Corgi mix? I remember him, his FGF4 variant was wild, those little legs could hold a small house.'

These dogs gave something most people don't realize. The Heroes in the Golden Retriever Lifetime Study showed up for blood draws, health surveys, fur and nail samples, every single year. Some of them for 14 years. Their data has taught us about lymphoma, hemangiosarcoma, and aging in ways that help not just dogs but potentially humans. And they didn't ask for any of it.

Morris Animal Foundation calls them Heroes. We agree.

If your dog was part of any of these studies, we want to give you their page. Their real name. Their real photo. The recognition they earned.

Email [email protected].

About PFZ34H04_PFZ34H04

Predicted small by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
Carries one copy of the FGF4 chondrodysplasia retrogene.
Carrier of the RSPO2 wire-coat variant (single copy).

PFZ34H04_PFZ34H04's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ34H04_PFZ34H04's. Click any of them to keep exploring.

PFZ34H04_PFZ34H04's breed

PFZ34H04_PFZ34H04 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

Golden Retriever 56%
Labrador Retriever 44%

Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Toy Manchester Terrier.

Full genotype detail

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The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size

IGF1	A/A
HMGA2	C/C
SMAD2	A/A
LCORL	G/G
STC2	A/A
ADAMTS17	G/A

Leg length

FGF4·CFA18	T/C
FGF4·CFA12	C/C

Coat

RSPO2	C/T
FGF5	T/T
KRT71	C/C
MC1R	C/C

Ear set

MSRB3

A/A

Skull shape

BMP3	T/T
SMOC2	G/G

Technical details

click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position

x 4.136
y 1.287
z 2.101

Top-3 principal components by |z|

The 3 PCs on which PFZ34H04_PFZ34H04 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC250 z = 2.03

chr9:17,840,166 loading 0.0300
chr9:50,441,577 loading 0.0297
chr15:28,843,971 loading -0.0296

PC199 z = -1.84

chr3:72,396,064 loading 0.0333
chr10:25,699,634 loading 0.0321
chr13:22,942,852 loading 0.0315

PC247 z = 1.70

chr3:7,959,527 loading 0.0294
chr16:43,038,278 loading -0.0293
chr19:17,213,086 loading 0.0288

Ancestry reconstruction error: 0.67

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