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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ36C11_PFZ36C11, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ36C11_PFZ36C11

PFZ36C11_PFZ36C11 is a Golden Retriever from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ36C11_PFZ36C11 in the atlas
About PFZ36C11_PFZ36C11

PFZ36C11_PFZ36C11 sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ36C11_PFZ36C11's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ36C11_PFZ36C11's. Click any of them to keep exploring.

  1. GRLS_grlsCQ626MAA Golden Retriever 32.69
  2. GRLS_grlsJRUZH4TT Golden Retriever 33.32
  3. GRLS_grlsTGIYGC55 Golden Retriever 33.71
  4. PFZ7D05_PFZ7D05 Golden Retriever 33.80
  5. GRLS_grls8JLHU1WW Golden Retriever 34.08
PFZ36C11_PFZ36C11's breed

PFZ36C11_PFZ36C11 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 80%
  2. Labrador Retriever 20%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.268
y 10.422
z 8.860
PCA-256 distance from breed centroid
32.39
Outlier percentile in breed
39
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ36C11_PFZ36C11 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC179 z = 2.88
  • chr34:3,531,310 loading 0.0341
  • chr34:3,128,578 loading -0.0327
  • chr4:57,360,298 loading -0.0326
PC99 z = 2.83
  • chr34:1,972,619 loading 0.0494
  • chr34:1,533,247 loading 0.0454
  • chr34:2,440,834 loading -0.0445
PC111 z = 2.28
  • chr25:27,400,046 loading 0.0340
  • chr8:38,891,669 loading -0.0320
  • chr6:31,045,365 loading -0.0319
Ancestry reconstruction error: 0.53
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