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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ40G05_PFZ40G05, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ40G05_PFZ40G05

PFZ40G05_PFZ40G05 is a Golden Retriever from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ40G05_PFZ40G05 in the atlas
About PFZ40G05_PFZ40G05

PFZ40G05_PFZ40G05 sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
PFZ40G05_PFZ40G05's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ40G05_PFZ40G05's. Click any of them to keep exploring.

  1. PFZ40C06_PFZ40C06 Golden Retriever 19.72
  2. GRLS_grlsA5ZQQLJJ Golden Retriever 28.17
  3. GRLS_grls4F1HRC55 Golden Retriever 29.50
  4. GRLS_grls59085811 Golden Retriever 29.60
  5. GRLS_grlsYQFB3ZZ Golden Retriever 29.69
PFZ40G05_PFZ40G05's breed

PFZ40G05_PFZ40G05 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 83%
  2. Labrador Retriever 17%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.165
y 11.641
z 8.052
PCA-256 distance from breed centroid
30.86
Outlier percentile in breed
31
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ40G05_PFZ40G05 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC43 z = -3.33
  • chr28:11,007,373 loading 0.0365
  • chr28:5,497,677 loading 0.0343
  • chr7:43,226,466 loading 0.0325
PC238 z = -2.43
  • chr19:11,652,672 loading 0.0365
  • chr13:13,884,830 loading -0.0338
  • chr3:70,346,120 loading -0.0302
PC126 z = 2.40
  • chr21:31,645,739 loading 0.0387
  • chr21:34,014,573 loading -0.0385
  • chr26:6,573,837 loading 0.0382
Ancestry reconstruction error: 0.61
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