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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ41G05_PFZ41G05, a Boxer
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ41G05_PFZ41G05

PFZ41G05_PFZ41G05 is a Boxer from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ41G05_PFZ41G05 in the atlas
About PFZ41G05_PFZ41G05

PFZ41G05_PFZ41G05 sits well inside the Boxer cluster - a fairly typical example.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
PFZ41G05_PFZ41G05's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ41G05_PFZ41G05's. Click any of them to keep exploring.

  1. PFZ41E04_PFZ41E04 Boxer 11.66
  2. PFZ23B10_PFZ23B10 Boxer 15.04
  3. PFZ23E09_PFZ23E09 Boxer 15.72
  4. PFZ40G04_PFZ40G04 Boxer 16.15
  5. B3-B2-MALE-2833_B3-B2-MALE-2833 Boxer 16.19
PFZ41G05_PFZ41G05's breed

PFZ41G05_PFZ41G05 sits in the Boxer cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Boxer 94%
  2. Labrador Retriever 6%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Boxer.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL A/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x -4.116
y 0.418
z -1.981
PCA-256 distance from breed centroid
17.13
Outlier percentile in breed
48
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ41G05_PFZ41G05 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC6 z = -7.35
  • chr21:49,939,565 loading 0.0237
  • chr6:69,385,669 loading 0.0231
  • chr30:13,959,767 loading -0.0230
PC7 z = -3.54
  • chr17:45,883,815 loading 0.0290
  • chr17:6,654,333 loading 0.0283
  • chr34:27,183,296 loading 0.0282
PC5 z = -2.52
  • chr1:24,578,804 loading 0.0240
  • chr2:19,906,795 loading 0.0230
  • chr13:51,091,794 loading 0.0227
Ancestry reconstruction error: 0.16
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