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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ42C04_PFZ42C04, a Cane Corso
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ42C04_PFZ42C04

PFZ42C04_PFZ42C04 is a Cane Corso from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ42C04_PFZ42C04 in the atlas
About PFZ42C04_PFZ42C04

PFZ42C04_PFZ42C04 sits well inside the Cane Corso cluster - a fairly typical example.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ42C04_PFZ42C04's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ42C04_PFZ42C04's. Click any of them to keep exploring.

  1. PFZ42H05_PFZ42H05 Cane Corso 20.42
  2. PFZ15D04_PFZ15D04 Cane Corso 20.90
  3. PFZ42B04_PFZ42B04 Cane Corso 21.08
  4. PFZ15F02_PFZ15F02 Cane Corso 21.21
  5. PFZ15H07_PFZ15H07 Cane Corso 21.66
PFZ42C04_PFZ42C04's breed

PFZ42C04_PFZ42C04 sits in the Rottweiler cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Rottweiler 81%
  2. Golden Retriever 19%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Cane Corso.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 C/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 T/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 2.762
y 0.703
z 1.485
PCA-256 distance from breed centroid
18.74
Outlier percentile in breed
28
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ42C04_PFZ42C04 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC143 z = 4.95
  • chr19:5,388,895 loading 0.0376
  • chr3:44,551,375 loading -0.0365
  • chr19:3,007,160 loading 0.0337
PC142 z = 4.51
  • chr23:22,412,099 loading 0.0339
  • chr12:15,112,297 loading -0.0336
  • chr12:4,421,359 loading 0.0318
PC128 z = -4.09
  • chr28:1,724,663 loading 0.0466
  • chr28:1,967,976 loading -0.0397
  • chr28:2,486,426 loading -0.0376
Ancestry reconstruction error: 0.78
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