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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ42D05_PFZ42D05, a Boxer
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ42D05_PFZ42D05

PFZ42D05_PFZ42D05 is a Boxer from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ42D05_PFZ42D05 in the atlas
About PFZ42D05_PFZ42D05

PFZ42D05_PFZ42D05 is a strong genetic outlier within the Boxer cluster - among the most distinctive examples of their breed.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ42D05_PFZ42D05's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ42D05_PFZ42D05's. Click any of them to keep exploring.

  1. Box_LU134_Box_LU134 Boxer 16.66
  2. Box_LU129_Box_LU129 Boxer 16.67
  3. cHD11_144_cHD11_144 Boxer 16.69
  4. cHD11_132_cHD11_132 Boxer 17.45
  5. cHD11_142_cHD11_142 Boxer 17.48
PFZ42D05_PFZ42D05's breed

PFZ42D05_PFZ42D05 sits in the Boxer cluster, with genome overlap to Labrador Retriever, and Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Boxer 86%
  2. Labrador Retriever 7%
  3. Golden Retriever 6%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Boxer.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 C/T
SMAD2 G/G
LCORL A/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/T
KRT71 T/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/A
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x -3.442
y 0.303
z -0.668
PCA-256 distance from breed centroid
39.46
Outlier percentile in breed
92
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ42D05_PFZ42D05 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC6 z = -6.42
  • chr21:49,939,565 loading 0.0237
  • chr6:69,385,669 loading 0.0231
  • chr30:13,959,767 loading -0.0230
PC133 z = -5.67
  • chr6:3,210,008 loading 0.0329
  • chr28:1,791,942 loading 0.0327
  • chr28:1,882,913 loading 0.0326
PC148 z = 4.92
  • chr6:30,769,727 loading 0.0436
  • chr1:62,992,483 loading -0.0356
  • chr6:30,876,588 loading -0.0355
Ancestry reconstruction error: 0.43
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