Skip to main content
snıff
CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ43C09_PFZ43C09, a Labrador Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ43C09_PFZ43C09

PFZ43C09_PFZ43C09 is a Labrador Retriever from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ43C09_PFZ43C09 in the atlas
About PFZ43C09_PFZ43C09

PFZ43C09_PFZ43C09 sits well inside the Labrador Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ43C09_PFZ43C09's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ43C09_PFZ43C09's. Click any of them to keep exploring.

  1. PFZ1D11_PFZ1D11 Labrador Retriever 20.60
  2. cHD8_491_cHD8_491 Labrador Retriever 20.77
  3. PFZ17C11_PFZ17C11 Labrador Retriever 21.28
  4. 3082_3082 Labrador Retriever 21.79
  5. PFZ35B11_PFZ35B11 Labrador Retriever 21.98
PFZ43C09_PFZ43C09's breed

PFZ43C09_PFZ43C09 sits in the Labrador Retriever cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Labrador Retriever 78%
  2. Golden Retriever 22%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Labrador Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 G/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.041
y -0.287
z 8.053
PCA-256 distance from breed centroid
57.75
Outlier percentile in breed
41
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ43C09_PFZ43C09 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC3 z = -2.80
  • chr6:50,750,182 loading 0.0295
  • chr6:65,585,567 loading 0.0275
  • chr1:14,618,344 loading 0.0264
PC2 z = -2.46
  • chr32:5,376,122 loading 0.0244
  • chr22:41,669,426 loading -0.0232
  • chr9:23,202,173 loading 0.0228
PC125 z = -2.42
  • chr26:7,428,484 loading 0.0355
  • chr21:3,789,149 loading 0.0351
  • chr4:1,268,630 loading 0.0319
Ancestry reconstruction error: 0.86
Back to the Atlas →