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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ5B01_PFZ5B01, a Labrador Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ5B01_PFZ5B01

PFZ5B01_PFZ5B01 is a Labrador Retriever from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ5B01_PFZ5B01 in the atlas
About PFZ5B01_PFZ5B01

PFZ5B01_PFZ5B01 sits near the center of the Labrador Retriever cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
PFZ5B01_PFZ5B01's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ5B01_PFZ5B01's. Click any of them to keep exploring.

  1. PFZ18H09_PFZ18H09 Labrador Retriever 23.65
  2. PFZ44E07_PFZ44E07 Labrador Retriever 23.86
  3. PFZ38B01_PFZ38B01 Labrador Retriever 23.89
  4. cHD15_56_cHD15_56 Labrador Or Golden Retriever 23.97
  5. PFZ43F02_PFZ43F02 Labrador Retriever 24.65
PFZ5B01_PFZ5B01's breed

PFZ5B01_PFZ5B01 sits in the Labrador Retriever cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Labrador Retriever 71%
  2. Golden Retriever 29%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Labrador Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.040
y 0.594
z 5.863
PCA-256 distance from breed centroid
47.03
Outlier percentile in breed
3
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ5B01_PFZ5B01 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC160 z = -2.13
  • chr26:4,196,092 loading 0.0325
  • chr1:1,402,180 loading -0.0321
  • chr17:2,046,668 loading -0.0309
PC248 z = 2.12
  • chr26:5,045,393 loading 0.0400
  • chr26:4,196,092 loading -0.0355
  • chr26:4,873,718 loading -0.0344
PC216 z = 2.07
  • chr6:57,387,289 loading 0.0303
  • chr14:13,904,420 loading -0.0294
  • chr30:3,709,721 loading 0.0293
Ancestry reconstruction error: 0.88
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