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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ5D05_PFZ5D05, a Labrador Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ5D05_PFZ5D05

PFZ5D05_PFZ5D05 is a Labrador Retriever from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ5D05_PFZ5D05 in the atlas
About PFZ5D05_PFZ5D05

PFZ5D05_PFZ5D05 sits at the edge of the Labrador Retriever cluster but still well within it.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
PFZ5D05_PFZ5D05's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ5D05_PFZ5D05's. Click any of them to keep exploring.

  1. cHD10_421_cHD10_421 Labrador Or Golden Retriever 21.25
  2. cHD17_487_cHD17_487 Labrador Or Golden Retriever 21.30
  3. PFZ38A03_PFZ38A03 Labrador Retriever 21.53
  4. cHD11_607_cHD11_607 Labrador Or Golden Retriever 21.85
  5. cHD15_59_cHD15_59 Labrador Or Golden Retriever 22.00
PFZ5D05_PFZ5D05's breed

PFZ5D05_PFZ5D05 sits in the Labrador Retriever cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Labrador Retriever 78%
  2. Golden Retriever 22%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Labrador Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.297
y 0.287
z 8.333
PCA-256 distance from breed centroid
60.68
Outlier percentile in breed
57
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ5D05_PFZ5D05 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC3 z = -2.92
  • chr6:50,750,182 loading 0.0295
  • chr6:65,585,567 loading 0.0275
  • chr1:14,618,344 loading 0.0264
PC2 z = -2.66
  • chr32:5,376,122 loading 0.0244
  • chr22:41,669,426 loading -0.0232
  • chr9:23,202,173 loading 0.0228
PC139 z = 2.55
  • chr11:59,916,847 loading 0.0380
  • chr1:13,688,590 loading -0.0336
  • chr9:44,269,754 loading 0.0311
Ancestry reconstruction error: 0.87
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