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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ5E09_PFZ5E09, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ5E09_PFZ5E09

PFZ5E09_PFZ5E09 is a Golden Retriever from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ5E09_PFZ5E09 in the atlas
About PFZ5E09_PFZ5E09

PFZ5E09_PFZ5E09 sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
PFZ5E09_PFZ5E09's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ5E09_PFZ5E09's. Click any of them to keep exploring.

  1. Oldies_grlsaf837bd5 Golden Retriever 27.46
  2. PFZ7H08_PFZ7H08 Golden Retriever 29.25
  3. GRLS_grlsI1LFYF33 Golden Retriever 29.33
  4. GRLS_grlsZLLUNLII Golden Retriever 30.26
  5. GRLS_grlsQ69TSEMM Golden Retriever 30.27
PFZ5E09_PFZ5E09's breed

PFZ5E09_PFZ5E09 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 78%
  2. Labrador Retriever 22%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 C/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.385
y 10.796
z 6.565
PCA-256 distance from breed centroid
28.82
Outlier percentile in breed
19
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ5E09_PFZ5E09 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC205 z = -1.97
  • chr28:15,673,727 loading 0.0386
  • chr7:26,386,959 loading -0.0358
  • chr7:26,293,949 loading -0.0338
PC174 z = -1.91
  • chr19:6,752,118 loading 0.0369
  • chr24:5,019,735 loading -0.0328
  • chr4:69,338,731 loading -0.0309
PC177 z = -1.88
  • chr12:606,598 loading 0.0433
  • chr12:4,288,226 loading -0.0385
  • chr12:1,150,085 loading 0.0383
Ancestry reconstruction error: 0.55
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