Skip to main content
snıff
CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ5G02_PFZ5G02, a Akita
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ5G02_PFZ5G02

PFZ5G02_PFZ5G02 is a Akita from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ5G02_PFZ5G02 in the atlas
About PFZ5G02_PFZ5G02

PFZ5G02_PFZ5G02 sits well inside the Akita cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ5G02_PFZ5G02's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ5G02_PFZ5G02's. Click any of them to keep exploring.

  1. PFZ5A10_PFZ5A10 Akita 13.59
  2. PFZ5C10_PFZ5C10 Akita 13.86
  3. PFZ4G02_PFZ4G02 Akita 13.88
  4. PFZ8F03_PFZ8F03 Akita 15.09
  5. PFZ5B10_PFZ5B10 Akita 15.24
PFZ5G02_PFZ5G02's breed

PFZ5G02_PFZ5G02 sits in the Akita cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Akita 94%
  2. Golden Retriever 6%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Akita.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/C
SMAD2 G/G
LCORL A/A
STC2 C/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 T/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x -1.887
y 14.958
z 9.584
PCA-256 distance from breed centroid
23.63
Outlier percentile in breed
27
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ5G02_PFZ5G02 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC100 z = -8.68
  • chr20:38,870,936 loading 0.0397
  • chr34:1,972,619 loading -0.0360
  • chr34:1,533,247 loading -0.0331
PC102 z = -6.82
  • chr6:44,418,248 loading 0.0371
  • chr21:24,347,827 loading 0.0363
  • chr13:28,713,034 loading 0.0324
PC98 z = -6.53
  • chr1:70,040,058 loading 0.0369
  • chr1:99,414,793 loading -0.0351
  • chr24:7,157,643 loading 0.0343
Ancestry reconstruction error: 0.23
Back to the Atlas →