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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ8E03_PFZ8E03, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ8E03_PFZ8E03

PFZ8E03_PFZ8E03 is a Golden Retriever from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ8E03_PFZ8E03 in the atlas
About PFZ8E03_PFZ8E03

PFZ8E03_PFZ8E03 sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ8E03_PFZ8E03's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ8E03_PFZ8E03's. Click any of them to keep exploring.

  1. GRLS_grlsEBWSTBVV Golden Retriever 29.39
  2. PFZ25F01_PFZ25F01 Golden Retriever 29.45
  3. PILOT_grlsDJRE99ZZ Golden Retriever 29.90
  4. GRLS_grlsJ4UVD6FF Golden Retriever 30.18
  5. GRLS_grlsGD3KTBVV Golden Retriever 30.59
PFZ8E03_PFZ8E03's breed

PFZ8E03_PFZ8E03 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 78%
  2. Labrador Retriever 22%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.218
y 11.530
z 8.042
PCA-256 distance from breed centroid
30.53
Outlier percentile in breed
29
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ8E03_PFZ8E03 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC171 z = 3.35
  • chr1:99,975,270 loading 0.0421
  • chr1:99,774,502 loading 0.0419
  • chr1:99,902,496 loading 0.0354
PC43 z = -3.24
  • chr28:11,007,373 loading 0.0365
  • chr28:5,497,677 loading 0.0343
  • chr7:43,226,466 loading 0.0325
PC173 z = -2.37
  • chr17:4,173,842 loading 0.0406
  • chr17:4,233,511 loading 0.0400
  • chr17:4,353,120 loading 0.0343
Ancestry reconstruction error: 0.58
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