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Cosmic medallion portrait of PILOT_grlsCLYGX6JJ, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PILOT_grlsCLYGX6JJ

PILOT_grlsCLYGX6JJ is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See PILOT_grlsCLYGX6JJ in the atlas
About PILOT_grlsCLYGX6JJ

PILOT_grlsCLYGX6JJ sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PILOT_grlsCLYGX6JJ's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PILOT_grlsCLYGX6JJ's. Click any of them to keep exploring.

  1. GRLS_grls5IG7YDYY Golden Retriever 29.47
  2. GRLS_grlsVCLYL133 Golden Retriever 30.26
  3. GRLS_grlsCI5MVMDD Golden Retriever 30.35
  4. GRLS_grlsFXBOOEEE Golden Retriever 30.45
  5. PFZ23C02_PFZ23C02 Golden Retriever 30.55
PILOT_grlsCLYGX6JJ's breed

PILOT_grlsCLYGX6JJ sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 81%
  2. Labrador Retriever 19%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.836
y 10.794
z 8.231
PCA-256 distance from breed centroid
28.09
Outlier percentile in breed
15
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PILOT_grlsCLYGX6JJ scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC233 z = 2.60
  • chr16:48,608,303 loading 0.0348
  • chr13:24,655,299 loading -0.0330
  • chr23:1,734,032 loading 0.0330
PC171 z = 2.48
  • chr1:99,975,270 loading 0.0421
  • chr1:99,774,502 loading 0.0419
  • chr1:99,902,496 loading 0.0354
PC195 z = -2.47
  • chr17:4,173,842 loading 0.0436
  • chr17:4,233,511 loading 0.0413
  • chr17:4,128,965 loading 0.0412
Ancestry reconstruction error: 0.53
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