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Cosmic medallion portrait of PILOT_grlsECC2VNOO, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PILOT_grlsECC2VNOO

PILOT_grlsECC2VNOO is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See PILOT_grlsECC2VNOO in the atlas
About PILOT_grlsECC2VNOO

PILOT_grlsECC2VNOO sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
PILOT_grlsECC2VNOO's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PILOT_grlsECC2VNOO's. Click any of them to keep exploring.

  1. GRLS_grlsK1SQLTTT Golden Retriever 30.64
  2. GRLS_grlsI1LFYF33 Golden Retriever 31.64
  3. GRLS_grlsHBRO1TFF Golden Retriever 32.49
  4. GRLS_grlsREG9VNN Golden Retriever 32.83
  5. Oldies_grlsa68878ca Golden Retriever 32.92
PILOT_grlsECC2VNOO's breed

PILOT_grlsECC2VNOO sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 82%
  2. Labrador Retriever 18%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 C/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.397
y 10.777
z 6.486
PCA-256 distance from breed centroid
32.65
Outlier percentile in breed
40
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PILOT_grlsECC2VNOO scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC82 z = 2.94
  • chr1:68,097,128 loading 0.0396
  • chr1:69,785,342 loading -0.0385
  • chr1:70,040,058 loading 0.0383
PC252 z = -2.62
  • chr19:30,132,204 loading 0.0320
  • chr25:21,796,415 loading -0.0316
  • chr3:5,565,848 loading 0.0303
PC167 z = -2.48
  • chr6:3,625,190 loading 0.0407
  • chr6:3,210,008 loading -0.0395
  • chr6:3,012,938 loading -0.0395
Ancestry reconstruction error: 0.58
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