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Cosmic medallion portrait of PILOT_grlsPDRIOFQQ, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PILOT_grlsPDRIOFQQ

PILOT_grlsPDRIOFQQ is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See PILOT_grlsPDRIOFQQ in the atlas
About PILOT_grlsPDRIOFQQ

PILOT_grlsPDRIOFQQ is a notable Golden Retriever - distinctive within the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PILOT_grlsPDRIOFQQ's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PILOT_grlsPDRIOFQQ's. Click any of them to keep exploring.

  1. GRLS_grlsXNWIIR22 Golden Retriever 26.11
  2. GRLS_grlsQ92M8HH Golden Retriever 34.52
  3. PILOT_grls4DM9Y9XX Golden Retriever 35.50
  4. GRLS_grlsJ1MACZ66 Golden Retriever 37.34
  5. PILOT_grlsHL9OSX55 Golden Retriever 38.25
PILOT_grlsPDRIOFQQ's breed

PILOT_grlsPDRIOFQQ sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 77%
  2. Labrador Retriever 24%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.381
y 10.560
z 9.271
PCA-256 distance from breed centroid
42.58
Outlier percentile in breed
85
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PILOT_grlsPDRIOFQQ scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC64 z = -4.82
  • chr8:38,372,734 loading 0.0317
  • chr23:20,107,050 loading 0.0304
  • chr23:19,874,668 loading -0.0292
PC239 z = 4.00
  • chr26:2,885,742 loading 0.0312
  • chr11:18,600,601 loading 0.0306
  • chr1:62,634,942 loading 0.0302
PC63 z = 3.15
  • chr22:1,969,643 loading 0.0329
  • chr22:1,892,165 loading 0.0327
  • chr17:12,181,234 loading 0.0322
Ancestry reconstruction error: 0.63
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