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Cosmic medallion portrait of PILOT_grlsSBR1O1DD, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PILOT_grlsSBR1O1DD

PILOT_grlsSBR1O1DD is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See PILOT_grlsSBR1O1DD in the atlas
About PILOT_grlsSBR1O1DD

PILOT_grlsSBR1O1DD sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PILOT_grlsSBR1O1DD's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PILOT_grlsSBR1O1DD's. Click any of them to keep exploring.

  1. PFZ23C02_PFZ23C02 Golden Retriever 30.34
  2. Oldies_grlsaf837bd5 Golden Retriever 30.85
  3. Oldies_grls19c93b34 Golden Retriever 30.92
  4. Oldies_grls38c6ec88 Golden Retriever 31.59
  5. GRLS_grls3F95H0TT Golden Retriever 31.74
PILOT_grlsSBR1O1DD's breed

PILOT_grlsSBR1O1DD sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 80%
  2. Labrador Retriever 20%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.818
y 10.679
z 7.841
PCA-256 distance from breed centroid
25.33
Outlier percentile in breed
2
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PILOT_grlsSBR1O1DD scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC120 z = 2.81
  • chr3:1,222,422 loading 0.0435
  • chr34:3,128,578 loading 0.0397
  • chr34:1,919,265 loading -0.0396
PC172 z = 2.30
  • chr13:4,083,191 loading 0.0359
  • chr24:4,114,956 loading 0.0356
  • chr13:12,284,714 loading 0.0349
PC119 z = -2.23
  • chr24:2,576,794 loading 0.0370
  • chr6:3,625,190 loading 0.0350
  • chr6:3,210,008 loading -0.0323
Ancestry reconstruction error: 0.51
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